PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04408.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 255aa    MW: 28676.2 Da    PI: 4.6639
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04408.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.6e-1752101255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr +k +g+Wv+e+r+p   +k+ r++lg+f tae Aa+a++ a+++l+g
  Rsa1.0_04408.1_g00001.1  52 IYRGVRLRK-SGKWVCEVREP---NKKSRIWLGTFKTAEIAARAHDVAALALRG 101
                              69******9.7******9998...347*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-1251101IPR001471AP2/ERF domain
CDDcd000183.61E-3051111No hitNo description
SuperFamilySSF541711.96E-2052111IPR016177DNA-binding domain
SMARTSM003805.1E-2952115IPR001471AP2/ERF domain
PROSITE profilePS5103221.60152109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-3052111IPR001471AP2/ERF domain
PRINTSPR003671.9E-85364IPR001471AP2/ERF domain
PRINTSPR003671.9E-87591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDSISTFPEL LGSENESPVT TVVGGDYCPR LAASCPKKPA GRKKFQETRH PIYRGVRLRK  60
SGKWVCEVRE PNKKSRIWLG TFKTAEIAAR AHDVAALALR GRGACLNFAD SAWRLRIPET  120
TCAKDIQKAA AEAALAFEAE KSDHGMNMKN TTAVASQVEV NDTTTDHGVD MEETLVEAVF  180
TEEQREGFYM TEETRVEGVV TEEQNNWFYM DEEWMFGMPT LLVDMAEGML IPRQSVQSGH  240
YDDFEGDVDM NLWSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893090.0AC189309.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034C07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001302772.11e-146dehydration-responsive element-binding protein 1B-like
RefseqXP_013602884.11e-146PREDICTED: dehydration-responsive element-binding protein 1B-like
SwissprotQ9SYS61e-106DRE1C_ARATH; Dehydration-responsive element-binding protein 1C
TrEMBLA0A0D3DMV11e-146A0A0D3DMV1_BRAOL; Uncharacterized protein
TrEMBLQ8W2421e-146Q8W242_BRANA; CBF-like protein
STRINGBra010461.1-P1e-139(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.16e-88C-repeat/DRE binding factor 1